I absolutely love sharing this Apple Pecan Cookie Cups Recipe because it’s one of those delightful little treats that feel like a cozy hug on a plate. The buttery cream cheese crust paired with warm cinnamon-spiced apple and crunchy pecans is just irresistible. Whether you’re baking for a holiday party or just craving a comforting autumn snack, these cookie cups are sure to please.

When I first tried this recipe, I was smitten by how easy it was to make a flaky, rich crust that perfectly cradled the sweet filling. You’ll find that it’s a fantastic way to enjoy the classic flavors of apple and pecan without the fuss of a pie. Trust me, once you make these, they’ll become a go-to in your baking rotation.

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Why You’ll Love This Recipe

  • Perfect blend of flavors: Sweet apples, warm cinnamon, and crunchy pecans combine beautifully in each bite.
  • Easy to prep ahead: You chill the crust dough for just an hour, making it manageable even on busy days.
  • Fun individual servings: These cookie cups are perfect for portion control and make sharing a breeze.
  • Great for any occasion: From casual get-togethers to festive celebrations, they fit right in.

Ingredients You’ll Need

The ingredients here work harmoniously to create a creamy, tender crust and a flavorful filling that’s just right — not too sweet, not too heavy. Plus, these are common pantry staples, so you likely have most on hand already.

  • Cream cheese: Softened cream cheese adds richness and tenderness to the crust, making it melt-in-your-mouth good.
  • Unsalted butter: Helps create a flaky, buttery crust—always opt for unsalted so you control the salt levels.
  • All-purpose flour: The base for the crust, providing structure without toughness.
  • Powdered sugar: Adds sweetness and helps bind the crust perfectly.
  • Large egg: Binds the filling ingredients together and adds a bit of richness.
  • Brown sugar: Brings warmth and depth to the apple-pecan filling.
  • Pecans: Chopped pecans provide irresistible crunch and complement the apples beautifully.
  • Apples: Peeled and diced small for tender sweetness; I recommend tart varieties like Granny Smith.
  • Vanilla extract: Enhances the flavors and adds a lovely aroma.
  • Ground cinnamon: A classic spice that pairs perfectly with apples and pecans.
  • Powdered sugar for garnish: A pretty finishing touch that adds subtle sweetness and looks adorable.
Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

One of the best things about this Apple Pecan Cookie Cups Recipe is how easy it is to personalize. I often switch things up depending on the season or what I have in my pantry – feel free to get creative!

  • Nut substitutions: Once I swapped pecans for walnuts and still loved the crunchy texture and nutty flavor.
  • Apple varieties: Using sweeter apples like Honeycrisp makes these really mellow, while tart apples like Granny Smith keep them bright and zesty.
  • Spice additions: I sometimes add a pinch of nutmeg or allspice for a deeper fall flavor profile.
  • Gluten-free option: Swap all-purpose flour for a gluten-free blend that’s good for baking to make these allergy-friendly.

How to Make Apple Pecan Cookie Cups Recipe

Step 1: Prepare the Cream Cheese Crust

Start by beating the softened cream cheese and butter until completely smooth and combined—this usually takes about 2 minutes with an electric mixer. Then, add the flour and powdered sugar gradually, mixing just until everything comes together into a soft dough. I discovered that chilling the dough in the freezer for exactly one hour helps make it easier to handle and keeps the crust tender and flaky.

Step 2: Mix the Apple Pecan Filling

While the dough chills, combine the egg, brown sugar, chopped pecans, diced apples, vanilla extract, and cinnamon in a bowl. Mix gently with a fork, so you don’t mush the apples but get everything evenly coated. This simple mix-up is the star filling in the Apple Pecan Cookie Cups Recipe and smells amazing as you stir it.

Step 3: Shape the Cookie Cups

Once your dough is chilled, scoop out a tablespoon-sized portion, roll it into a ball, and press it gently into each cavity of a mini muffin pan. You don’t have to grease the pan if it’s non-stick, but if you want extra insurance against sticking, a quick spray won’t hurt. I use a tart shaper or just my fingertips to press the dough evenly, making sure not to push it over the edges of the cups.

Step 4: Fill and Bake

Drop about a teaspoon of the apple pecan filling into each crust-lined cup. The filling might bubble up a little as it bakes—I’ve found placing the muffin pan on a baking sheet helps catch any overflow and keeps your oven clean. Bake in a preheated 375°F oven for about 20 minutes or until the crust is golden and the filling looks set.

Step 5: Cool and Serve

Once out of the oven, let the cookie cups cool in the pan for 15-20 minutes so they firm up a bit. Gently pop them out and give them a dusting of powdered sugar for that pretty, classic finish. I always try one immediately—it’s hard to resist!

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Pro Tips for Making Apple Pecan Cookie Cups Recipe

  • Chill the dough thoroughly: I once rushed this step and found the dough too sticky to work with, so the hour in the freezer really helps.
  • Use tart apples: They hold their shape better and balance the sweetness of the brown sugar perfectly.
  • Don’t overfill: Filling bubbles can overflow, so stick to about a teaspoon to keep things neat.
  • Cool before removing: Waiting 20 minutes keeps the cookie cups intact without breaking apart.

How to Serve Apple Pecan Cookie Cups Recipe

A group of small round tarts stacked on a white plate, each tart has a golden flaky crust forming the base and sides with a slightly raised edge, the filling is a textured mix of chopped nuts in light to dark brown shades, topped with a dusting of white powdered sugar that lightly covers the tart tops and plate. Some pieces of nuts are scattered around the plate on a white marbled surface. Photo taken with an iphone --ar 4:5 --v 7

Garnishes

I keep it simple with a light sprinkle of powdered sugar because it adds sweetness without overpowering the natural flavors. Occasionally, I’ll add a small dollop of whipped cream or a drizzle of caramel sauce for a special touch that really makes these cookie cups sing.

Side Dishes

These cookie cups pair wonderfully with a hot cup of coffee or a cozy mug of spiced chai tea. For brunch, I like serving them alongside fresh fruit or a light yogurt parfait to balance their richness.

Creative Ways to Present

For holiday parties, I arrange these cookie cups on a tiered dessert stand and add autumn leaves or fresh cranberries around them for seasonal charm. I’ve also gifted them in small decorative boxes tied with twine, and they’ve been a huge hit!

Make Ahead and Storage

Storing Leftovers

I store leftover cookie cups in an airtight container in the fridge for up to five days. They keep their flavor well, but I recommend bringing them to room temperature before serving to enjoy the best texture.

Freezing

I’ve found these freeze beautifully! After baking and cooling, I pop them into a freezer-safe container, separating layers with parchment paper. They’ll last up to three months — perfect for prepping ahead of busy holidays.

Reheating

To reheat, I place the cookie cups on a baking sheet and warm them in a 325°F oven for about 8-10 minutes. This revives the crispness of the crust while gently warming the filling. Avoid the microwave if you want to keep that lovely texture.

FAQs

  1. Can I use a different type of nut instead of pecans in the Apple Pecan Cookie Cups Recipe?

    Absolutely! Walnuts or even almonds make great substitutes if you want to switch things up or accommodate allergies. Just chop them finely to maintain the right texture in the filling.

  2. Do I have to use cream cheese in the crust?

    Cream cheese adds moisture and tenderness to the crust, but if you prefer, you can experiment with a traditional butter-only crust. However, the texture and flavor will be different—so this recipe shines best with cream cheese.

  3. What’s the best apple to use in this recipe?

    Tart apples like Granny Smith or Pink Lady stand out in this cookie cup recipe because they hold their shape well and balance the sweetness of the brown sugar perfectly. Sweet apples like Honeycrisp also work if you prefer a mellower flavor.

  4. Can I make these Apple Pecan Cookie Cups ahead of time?

    Yes! You can prepare the dough and filling ahead, then assemble and bake right before serving. Also, fully baked cookie cups freeze well, making them a convenient make-ahead dessert.

Final Thoughts

I love how approachable and comforting this Apple Pecan Cookie Cups Recipe feels, yet it’s special enough to impress whenever I make it. It’s like capturing the best parts of a classic apple pie in a delightful little package. You really can’t go wrong with these, and I’m sure once you try them, they’ll become a handbag staple for your recipe collection—perfect for cozy afternoons and sharing with friends.

Print
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Apple Pecan Cookie Cups Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.7 from 135 reviews
  • Author: Jasmine
  • Prep Time: 30 minutes
  • Cook Time: 20 minutes
  • Total Time: 1 hour 50 minutes
  • Yield: 24 servings
  • Category: Dessert
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Description

Delightful Apple Pecan Cookie Cups with a creamy crust and a spiced apple pecan filling, perfect for fall desserts or anytime you crave a sweet, nutty treat. These mini cookie cups combine a soft cream cheese crust with a warm cinnamon-scented apple and pecan filling, baked to golden perfection and finished with a dusting of powdered sugar.


Ingredients

For the crust:

  • 8 ounces cream cheese, softened
  • ½ cup unsalted butter, softened
  • 1 cup all-purpose flour
  • ¼ cup powdered sugar

For the filling:

  • 1 large egg
  • ¾ cup brown sugar
  • ½ cup pecans, chopped
  • ½ cup apples, peeled and diced small
  • ½ teaspoon vanilla extract
  • 1 teaspoon ground cinnamon
  • Powdered sugar for garnish


Instructions

  1. Prepare the crust dough: In a mixing bowl, beat the cream cheese and softened butter together until fully combined and smooth. Gradually add in the all-purpose flour and powdered sugar, continuing to mix until all ingredients are fully incorporated and the dough forms a soft ball.
  2. Chill the dough: Lay out a large piece of plastic wrap and place the dough in the center. Wrap tightly and refrigerate in the freezer for one hour to firm up, making it easier to handle.
  3. Make the filling: In a separate large bowl, gently combine the egg, brown sugar, chopped pecans, diced apples, vanilla extract, and ground cinnamon using a fork. Mix until all ingredients are evenly distributed, being careful not to overmix.
  4. Shape the cookie cups: After the dough has chilled, use a 1 tablespoon measuring spoon to scoop out a large portion. Roll it into a ball and press the dough into the cups of a mini muffin pan. You can lightly grease the pan if desired. Use your fingertips or a tart shaper to press the dough evenly, ensuring it stays within the edges of the cup. Repeat this for all the dough.
  5. Add the filling: Scoop about 1 teaspoon of the prepared filling into each dough-lined cup, filling them generously without overfilling to avoid spillage during baking.
  6. Bake: Place the muffin pan on a baking sheet (to catch any bubbling filling) and bake in a preheated oven at 375°F (190°C) for approximately 20 minutes, or until the crust is golden and the filling is set and bubbly.
  7. Cool and garnish: Remove the cookie cups from the oven and allow them to cool in the pan for 15-20 minutes. Once cooled, carefully pop each cookie cup out of the muffin pan and sprinkle them with powdered sugar for a delightful finishing touch. Serve and enjoy.

Notes

  • The filling may bubble out during baking; placing the muffin pan on a cookie sheet or foil can help catch drips and make cleanup easier.
  • If not consuming immediately, store the cookie cups in an airtight container in the refrigerator where they will keep fresh for about 5 days.
  • Granny Smith apples are recommended for their tartness, but other tart varieties like Pink Lady or sweeter apples such as Honeycrisp work well too.
  • You can freeze the apple pecan cookie cups in an airtight, freezer-safe container for up to 3 months.

Nutrition

  • Serving Size: 1 cookie cup
  • Calories: 150
  • Sugar: 12g
  • Sodium: 60mg
  • Fat: 9g
  • Saturated Fat: 4g
  • Unsaturated Fat: 4g
  • Trans Fat: 0g
  • Carbohydrates: 16g
  • Fiber: 1g
  • Protein: 2g
  • Cholesterol: 30mg

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